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Visualizing the arrangement of atoms has revolutionized a number of
fields ranging from physics, chemistry to biology. While there are
already a few ways to imaging atomic structures, each has its
limitations. Scanning probe microscopes are limited to imaging atomic
structures at surface. Transmission electron microscopes can resolve
atoms but only for samples thinner than ~ 30 nm. Crystallography can
reveal the globally averaged 3D atomic structures based on the
diffraction phenomenon, but requires crystals. These limitations can in
principle be overcome by using coherent imaging that is based upon the
principle of coherent scattering in combination with a method of direct
phase recovery called oversampling.

Fig. 1 Coherent
imaging uses computation as lenses, i.e. lensless imaging.
When a coherent wave illuminates a noncrystalline
specimen, shown in Fig. 1, the far-field diffraction pattern is
continuous and weak. This continuous diffraction pattern can be sampled
at a spacing finer than the Nyquist frequency (i.e. the inverse
of the specimen size), which corresponds to surrounding the electron
density of the specimen with a no-density region [1]. The higher the
sampling frequency, the larger the no-density region. When the
no-density region is larger than the electron density region, it has
been shown that the phases are uniquely encoded inside the diffraction
pattern [2] and can be directly recovered by using an iterative process
that takes advantage of information such as the fact that electron
density outside the object is zero and within the object is positive
[3].

Fig. 2 The first experiment of coherent
imaging in three dimensions. (a) A SEM image of a 3D
nanoscale specimen, which shows the surface structures, but not the
internal structures. (b) A coherent X-ray diffraction
pattern from (a). (c) An image
reconstructed from (b), showing both the surface and
internal structures. (d) Iso-surface rendering of a 3D
image reconstructed from thirty-one 2D diffraction patterns. (See ref.
6 for details)
The idea of imaging noncrystalline specimens by using
coherent X-rays was first suggested by Sayre in 1980 [4]. It was not
until in 1999 that the first experimental demonstration was carried out
by Miao et al [5]. Since then, a few groups have successfully
conducted coherent imaging experiments in both two and three dimensions
by using either X-rays or electrons. Fig. 2 shows the first experiment
of coherent imaging in three dimensions, which reveals internal
structures of a nanoscale material not accessible to scanning probe
microscopy. The application to biological samples has also been pursued
[7]. The samples were E. Coli bacteria with manganese labeling
of histidine-tagged yellow fluorescent proteins. Fig. 3(a) shows an
image directly reconstructed from an coherent X-ray diffraction
pattern. The reconstructed bacteria contain dense regions that probably
represent the histidine-tagged proteins labeled with manganese and a
semi-transparent region that is devoid of proteins. The observation was
confirmed by both transmission and fluorescence microscopy images shown
in Fig. 3(b).

(a) (b)
Fig. 3 Coherent X-ray imaging of E.
coli bacteria. (a) An image directly reconstructed from a
coherent X-ray diffraction pattern. The dense regions inside the
bacteria are likely the distribution of proteins labeled with KMnO4.
The semi-transparent regions are devoid of yellow fluorescence
proteins. (b) Individual bacteria are seen using transmitted
light (A, D) and fluorescence (B, E), where the yellow fluorescence
protein (green) is seen throughout most of the bacteria except for one
small region in each bacterium that is free of fluorescence (arrows). C
and F show the fluorescent image superimposed on the transmitted light
image. (See ref. 7 for details)
While coherent X-rays have been successfully used to
image a variety of specimens, the principle can also be extend to
optical lasers and electrons. Indeed, we recently proposed a 3D
electron diffraction microscope based on coherent electron diffraction
and the oversampling method [8]. The demonstration experiment of 2D
electron diffraction microscopy has just been carried out by Prof.
ZuoÕs group to image a double-wall carbon nanotube at 1
resolution, revealing the structure of two tubes of different
helicities [9].
So what is the future of coherent imaging? Well, with
the appearance of more coherent sources and faster computers, it is
safe to predict that coherent imaging will have a very bright future.
Our group will continue to stay at the frontier of this new and
exciting field. We will keep improving the spatial resolution and make
the image reconstruction faster and more reliable. Meanwhile, we will
also pursue its applications in nanoscience and biology by using
optical lasers, coherent X-rays and electrons. In the long run, in a
combination of the X-ray free electron lasers such as the Linac
Coherent Light Source at Stanford Linear Accelerator Center, coherent
imaging could potentially be used to determine the 3D structure of
single particles down to the single atom level [10, 11].
References
- J. Miao and D. Sayre, "On
possible extensions of X-ray crystallography through diffraction
pattern oversampling", Acta Cryst. A 56 , 596-605
(2000).
- J. Miao, D. Sayre and H. N. Chapman, "Phase
Retrieval from the Magnitude of the Fourier transform of Non-periodic
Objects", J. Opt. Soc. Am. A. A 15, 1662-1669
(1998).
- K. Robinson and J. Miao, “Three Dimensional Coherent X-ray Diffraction
Microscopy”, MRS Bulletin 29, 177-181 (2004).
- J. R. Fienup, "Phase retrieval algorithm: a
comparison", Appl. Opt. 21 , 2758-2769 (1982).
- D. Sayre in Imaging Processes and Coherence in
Physics. Springer Lecture Notes in Physics, vol. 112, M. Schlenker et
al., Eds. (Berlin: Springer, 1980) pp. 229-235.
- J. Miao, P. Charalambous, J. Kirz and D. Sayre, "Extending
the methodology of X-ray crystallography to allow imaging of
micrometre-sized non-crystalline specimens", Nature 400,
342-344 (1999).
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Lai and K. O. Hodgson, "High
Resolution 3D X-ray Diffraction Microscopy", Phys. Rev. Lett.,
89 , 088303 (2002).
- J. Miao, K. O. Hodgson, T. Ishikawa, C. A. Larabell,
M. A. LeGros and Y. Nishino, "Imaging
Whole Escherichia Coli Bacteria by Using Single Particle X-ray
Diffraction", Proc. Natl. Acad. Sci. USA 100,
110-112 (2003).
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A. OÕKeefe, "Atomic
Resolution Three-Dimensional Electron Diffraction Microscopy", Phys.
Rev. Lett., 89, 155502 (2002).
- J. M. Zuo, I. Vartanyants, M. Gao, R. Zhang and L. A.
Nagahara, "Atomic Resolution Imaging of a Carbon Nanotube from
Diffraction Intensities", Science 300, 1419 Ð 1421
(2003).
- J. Miao, K. O. Hodgson and D. Sayre, "A
New Approach to 3-D Structures of Biomolecules Utilizing Single
Molecule Diffraction Images", Proc. Natl. Acad. Sci. USA 98,
6641-6645 (2001).
- R. Neutze, R. Wouts, D. Spoel, E. Weckert and J.
Hajdu, "Potential for biomolecular imaging with femtosecond X-ray
pulses", Nature 406, 752-757 (2000).
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