Publications
- P. Tabeling,
G. Zocchi and A. Libchaber, “An experimental study
of the Saffman-Taylor instability”, J. Fluid Mech. 177,
67 (1987).
- M. Jensen,
A. Libchaber, P. Pelce’ and G. Zocchi, “Effect
of gravity on the Saffmann-Taylor meniscus: theory and experiment”,
Phys. Rev. A 35, 2221 (1987).
- G. Zocchi,
B. Shaw, A. Libchaber and L. Kadanoff, “Finger narrowing
under local perturbations in the Saffmann-Taylor problem”, Phys.
Rev. A 36, 1894 (1987).
- S. Gross,
G. Zocchi and A. Libchaber, “Ondes et plumes de couche
limite thermique”, C. R. Acad. Sci. Paris, t. 307 Serie II, 447
(1988).
- G. Zocchi,
E. Moses, and A. Libchaber, “Coherent structures
in turbulent convection, an experimental study”, Physica A 166,
387 (1990).
- E. Moses,
G. Zocchi, I. Procaccia and A. Libchaber, “The dynamics
and interactions of laminar thermal plumes”, Europhys. Lett. 14,
55 (1991).
- L. Kadanoff,
A. Libchaber, E. Moses, and G. Zocchi, “Turbulence
dans une boite”, La Recherche 232, 628 (1991).
- E. Moses,
G. Zocchi, and A. Libchaber, “An experimental study
of laminar plumes”, J. Fluid Mech. 251, 581
(1993).
- G. Zocchi,
P. Tabeling, and M. Benamar, “Saffman-Taylor plumes”,
Phys. Rev. Lett. 69, 601 (1992).
- J. Maurer,
P. Tabeling, and G. Zocchi, “Statistics of turbulence
between two counterrotating disks in low temperature Helium gas”,
Europhys. Lett. 26, 31 (1994).
- G. Zocchi,
P. Tabeling, J. Maurer, H. Willaime, “Measurement
of the scaling of the dissipation at high Reynolds numbers”,
Phys. Rev. E 50, 3693 (1994).
- P. Tabeling,
G. Zocchi, F. Belin, J. Maurer, H. Willaime,”Probability
density functions, skewness and flatness in large Reynolds number turbulence”,
Phys. Rev. E 53, 1613 (1996).
- G. Zocchi, “Mechanical measurement of the unfolding of a protein”,
Europhys. Lett. 35, 633 (1996).
- G. Zocchi, “Proteins unfold in steps”,
Proc. Natl. Acad. Sci. USA 94, 10647 (1997).
- A. Hansen,
M. Jensen, K. Sneppen, and G. Zocchi, “A hierarchical
scheme for cooperativity and folding in proteins”, Physica A 250,
355 (1998).
- H. Jensenius
and G. Zocchi, “Measuring the spring constant
of a single polymer chain”, Phys. Rev. Lett. 79,
5030 (1997).
- A. Hansen,
M. Jensen, K. Sneppen, and G. Zocchi, “Statistical
mechanics of warm and cold unfolding in proteins”, Eur. Phys.
J. B 6, 157 (1998).
- M. Singh-Zocchi,
A. Andreasen, and G. Zocchi, “Osmotic pressure
contribution of albumin to colloidal interactions”, Proc. Natl.
Acad. Sci. USA 96, 6711 (1999).
- A. Hansen,
M. Jensen, K. Sneppen, and G. Zocchi, “Hot and cold
denaturation of proteins: critical aspects”, Eur. Phys. J. B 10,
193 (1999).
- A. Hansen,
M. Jensen, K. Sneppen, and G. Zocchi, “A model for
the thermodynamics of globular proteins” Physica A 270,
278 (1999).
In The New Millennium
- A. Hansen,
M. H. Jensen, K. Sneppen and G. Zocchi, ``Proteins Top-Down: A Statistical
Mechanics Approach," Physica A, 288,
21 (2000).
- A. Hansen,
M. Jensen, K. Sneppen, and G. Zocchi, “Modeling
molecular motors as folding-unfolding cycles”, Europhys. Lett. 50,
120 (2000).
- A. Hansen,
M. H. Jensen, K. Sneppen and G. Zocchi, ``A Model for the Thermodynamics
of Proteins," in Soft Condensed Matter:
Configurations, Dynamics and Functionality, edited by A. T.
Skjeltorp and S. F. Edwards (Kluwer, Dordrecht, 2000).
- G. Zocchi, “Force measurements on single molecular contacts
through evanescent wave microscopy”, Biophys. J. 81,
2946 (2001).
- M. Singh-Zocchi,
J. Hanne, and G. Zocchi, “Plastic deformation
of protein layers”, Biophys. J. 83, 2211-18
(2002).
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- A. Montrichok,
G. Gruner, and G. Zocchi, “Trapping intermediates
in the melting transition of DNA oligomers”, Europhys. Lett. 62,
452 (2003).
- G. Zocchi,
A. Omerzu, T. Kuriabova, J. Rudnick, G. Gruner, “Duplex-single
strand denaturing transition in DNA oligomers”, cond-mat/0304567
(2003).
- M. Singh-Zocchi,
S. Dixit, V. Ivanov, and G. Zocchi, “Single
molecule detection of DNA hybridization”, Proc. Natl. Acad. Sci.
USA 100, 7605-10 (2003).
- Y. Zeng,
A. Montrichok, and G. Zocchi, “Length and statistical
weight of bubbles in DNA melting”, Phys. Rev. Lett. 91,
Number 14, 148101 (2003).
- V. Ivanov,
K. Grzeskowiak, and G. Zocchi, “Evidence for an
intermediate state in the B to Z transition of DNA”, J. Phys.
Chem. B 107, 12847-50 (2003).
- Y. Zeng,
A. Montrichok, and G. Zocchi, “Bubble nucleation and
cooperativity in DNA melting”, J. Mol. Biol. 339,
67-75 (2004).
- V. Ivanov,
Y. Zeng, and G. Zocchi, “Statistical mechanics of
base stacking and pairing in DNA melting”, Phys. Rev. E 70,
051907 (2004).
- B. Choi,
G. Zocchi, S. Canale, Y. Wu, S. Chan, L. Jeanne Perry, “Artificial
allosteric control of Maltose Binding Protein”, Phys. Rev. Lett. 94,
038103 (2005).
- S. Dixit,
M. Singh-Zocchi, J. Hanne, and G. Zocchi, “Mechanics
of Binding of a Single Integration-Host-Factor Protein to DNA”,
Phys. Rev. Lett. 94, 118101 (2005).
- V. Ivanov,
D. Piontkovski, and G. Zocchi, “Local Cooperativity
Mechanism in the DNA Melting Transition”, Phys. Rev. E 71,
041909 (2005).
- B.
Choi, G. Zocchi, Y. Wu, S. Chan, L. Jeanne Perry, “Allosteric control through mechanical tension”,
Phys. Rev. Lett. 95, 078102 (2005).
- G. Zocchi, “Analytical assays based on detecting conformational
changes of single molecules”, ChemPhysChem 7,
555-60 (2006).
- Y. Zeng
and G. Zocchi, “Mismatches and bubbles in DNA”,
Biophys. J. 90, 4522-29 (2006).
- B. Choi
and G. Zocchi, “Mimicking cAMP Dependent Allosteric
Control of Protein Kinase A through Mechanical Tension”, JACS 128,
8541-48 (2006).
- B. Choi
and G. Zocchi, “Guanylate Kinase, Induced Fit, and
the Allosteric Spring Probe”, Biophys. J. 92,
1651-58 (2007).
- J. Hanne,
G. Zocchi, N. K. Voulgarakis, A. R. Bishop and K. Ø.
Rasmussen, “Opening rates of DNA hairpins: experiment and model”,
to appear in Phys. Rev. E (2007).
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