1. R. Manekar, E. Negrini, M. Pham, D. Jacobs, J. Srivastava, S. J. Osher, and J. Miao, “Low-Light Phase Retrieval With Implicit Generative Priors”, IEEE Transactions on Image Processing. 33, 4728–4737 (2024). [PDF]


2. Y. Yang, J. Zhou, Z. Zhao, G. Sun, S. Moniri, C. Ophus, Y. Yang, Z. Wei, Y. Yuan, C. Zhu, Y. Liu, Q. Sun, Q. Jia, H. Heinz, J. Ciston, P. Ercius, P. Sautet, Y. Huang and J. Miao, “Atomic-scale identification of the active sites of oxygen reduction nanocatalysts”, Nat. Catal. 7, 796–806 (2024). [PDF]


3. C. M. O’Leary, H. Sha, J. Zhang, C. Su, S. Kahn, H. Jiang, A. Zettl, J. Ciston, and J. Miao, “Three-dimensional structure of buried heterointerfaces revealed by multislice ptychography”, Phys. Rev. Applied 22, 014016 (2024). [PDF]


4. M. Pham, X. Lu, A. Rana, S. Osher, and J. Miao, “Real space iterative reconstruction for vector tomography (RESIRE-V)”, Sci. Rep. 14, 9541 (2024). [PDF]


5. S. Moniri, Y. Yang, J. Ding, Y. Yuan, J. Zhou, L. Yang, F. Zhu, Y. Liao, Y. Yao, L. Hu, P. Ercius and J. Miao, “Three-dimensional atomic structure and local chemical order of medium and high-entropy nanoalloys”, Nature 624, 564–569 (2023). [PDF]


6. J. Miao, "Atomic electron tomography reveals chemical order in medium- and high-entropy alloys", Nature (2023). https://www.nature.com/articles/d41586-023-03656-5


7. Y. Yang, J. Zhou, Z. Zhao, G. Sun, S. Moniri, C. Ophus, Y. Yang, Z. Wei, Y. Yuan, C. Zhu, Q. Sun, Q. Jia, H. Heinz, J. Ciston, P. Ercius, P. Sautet, Y. Huang, and J. Miao, “Atomic-scale identification of the active sites of nanocatalysts”, arXiv 2202.09460 (2023). [PDF]


8. H.-Y. Chao, K. Venkatraman, S. Moniri, Y. Jiang, X. Tang, S. Dai, W. Gao, J. Miao, and M. Chi, "In Situ and Emerging Transmission Electron Microscopy for Catalysis Research", Chem. Rev. 123, 8347–8394 (2023). [PDF]


9. J.-H. Park, A.-Y. Lu, M.M. Tavakoli, N.Y. Kim, M.-H. Chiu, H. Liu, T. Zhang, Z. Wang, J. Wang, L.G.P. Martins, Z. Luo, M. Chi, J. Miao, and J. Kong, "Revealing Variable Dependences in Hexagonal Boron Nitride Synthesis via Machine Learning", Nano Lett. 23, 4741–4748 (2023). [PDF]


10. N.Y. Kim, S. Cao, K.L. More, A.R. Lupini, J. Miao, and M. Chi, “Hollow Ptychography: Toward Simultaneous 4D Scanning Transmission Electron Microscopy and Electron Energy Loss Spectroscopy”, Small 2208162 (2023). [PDF]


11. M. Pham, Y. Yuan, A. Rana, S. Osher, and J. Miao, “Accurate real space iterative reconstruction (RESIRE) algorithm for tomography”, Sci. Rep. 13, 5624 (2023). [PDF]


12. A. Rana, C.-T. Liao, E. Iacocca, J. Zou, M. Pham, X. Lu, E.-E. C. Subramanian, Y.H. Lo, S.A. Ryan, C.S. Bevis, R.M. Karl Jr., A.J. Glaid, J. Rable, P. Mahale, J. Hirst, T. Ostler, W. Liu, C.M. O’Leary, Y.-S. Yu, K. Bustillo, H. Ohldag, D.A. Shapiro, S. Yazdi, T.E. Mallouk, S.J. Osher, H.C. Kapteyn, V.H. Crespi, J.V. Badding, Y. Tserkovnyak, M.M. Murnane, and J. Miao, “Three-dimensional topological magnetic monopoles and their interactions in a ferromagnetic meta-lattice”, Nat. Nanotechnol. 18, 227–232 (2023). [PDF]


13. D.J. Chang, C.M. O’Leary, C. Su, D.A. Jacobs, S. Kahn, A. Zettl, J. Ciston, P. Ercius, and J. Miao, “Deep-Learning Electron Diffractive Imaging”, Phys. Rev. Lett. 130, 016101 (2023). [PDF]


14. J. Miao and M.M. Murnane, “A closer look at spin textures”, Nat. Nanotechnol. 18, 1-2 (2023). [PDF]


15. Y. Yao, Q. Dong, A. Brozena, J. Luo, J. Miao, M. Chi, C. Wang, I.G. Kevrekidis, Z.J. Ren, J. Greeley, G. Wang, A. Anapolsky, and L. Hu, “High Entropy Nanoparticles: Synthesis-Structure-Property Relationships and Data-Driven Discovery”, Science 376, eabn3103 (2022). [PDF]


16. Y. Yuan, D.S. Kim, J. Zhou, D.J. Chang, F. Zhu, Y. Nagaoka, Y. Yang, M. Pham, S.J. Osher, O. Chen, P. Ercius, A.K. Schmid, and J. Miao, "Three-dimensional atomic packing in amorphous solids with liquid-like structure", Nat. Mater. 21, 95–102 (2022). [PDF]


17. Q. Ji, C. Su, N. Mao, X. Tian, J.-C. Idrobo, J. Miao, W.A. Tisdale, A. Zettl, J. Li, and J. Kong, "Revealing the Brønsted-Evans-Polanyi relation in halide-activated fast MoS2 growth toward millimeter-sized 2D crystals", Sci. Adv. 7, eabj3274 (2021). [PDF]


18. X. Tian, X. Yan, G. Varnavides, Y. Yuan, D.S. Kim, CJ. Ciccarino, P. Anikeeva, M.-Y. Li, L.-J. Li, P. Narang, X. Pan, and J. Miao, "Capturing 3D atomic defects and phonon localization at the 2D heterostructure interface", Sci. Adv. 7, eabi6699 (2021). [PDF]


19. Y. Yang, J. Zhou, F. Zhu, Y. Yuan, D. Chang, D. S. Kim, M. Pham, A. Rana, X. Tian, Y. Yao, S. Osher, A. K. Schmid, L. Hu, P. Ercius, and J. Miao, "Determining the three-dimensional atomic structure of an amorphous solid", Nature 592, 60–64 (2021). [PDF]


20. M. Tanksalvala, C.L. Porter, Y. Esashi, B. Wang, N.W. Jenkins, Z. Zhang, G.P. Miley , J.L. Knobloch, B. McBennett, N. Horiguchi, S. Yazdi, J. Zhou, M.N. Jacobs, C.S. Bevis, R.M. Karl Jr., P. Johnsen, D. Ren, L. Waller, D.E. Adams, S.L. Cousin, C.-T. Liao, J. Miao, M. Gerrity, H.C. Kapteyn, and M.M. Murnane, "Nondestructive, high-resolution, chemically specific 3D nanostructure characterization using phase-sensitive EUV imaging reflectometry", Sci. Adv. 7, eabd9667 (2021). [PDF]


21. M. Bian, A.N. Kamenskii, M. Han, W. Li, S. Wei, X. Tian, D.B. Eason, F. Sun, K. He, H. Hui, F. Yao, R. Sabirianov, J.P. Bird, C. Yang, J. Miao, J. Lin , S.A. Crooker , Y. Hou, and H. Zeng, "Covalent 2D Cr₂Te₃ ferromagnet", Mater. Res. Lett. 9, 205–212 (2021). [PDF]


22. Y.H. Lo, J. Zhou, A. Rana, D. Morrill, C. Gentry, B. Enders, Y.-S. Yu, C.-Y. Sun, D.A. Shapiro, R.W. Falcone, H.C. Kapteyn, M.M. Murnane, P.U.P.A. Gilbert, and J. Miao, "X-ray linear dichroic ptychography", Proc. Natl. Acad. Sci. USA 118, e2019068118 (2021). [PDF]


23. P. Ci, X. Tian, J. Kang, A. Salazar, K. Eriguchi, S. Warkander, K. Tang, J. Liu, Y. Chen, S. Tongay, W. Walukiewicz, J. Miao, O. Dubon, and J. Wu, "Chemical trends of deep levels in van der Waals semiconductors", Nat. Commun. 11, 5373 (2020). [PDF]


24. D.J. Chang, D.S. Kim, A. Rana, X. Tian, J. Zhou, P. Ercius, and J. Miao, "Ptychographic atomic electron tomography: Towards three-dimensional imaging of individual light atoms in materials", Phys. Rev. B 102, 174101 (2020). [PDF]


25. J.B. Rosenzweig, N. Majernik, R.R. Robles, G. Andonian, O. Camacho, A. Fukasawa, A. Kogar, G. Lawler, J. Miao, P. Musumeci, B. Naranjo, Y. Sakai, R. Candler, B. Pound, C. Pellegrini, C. Emma, A. Halavanau, J. Hastings, Z. Li, M. Nasr, S. Tantawi, P. Anisimov, B. Carlsten, F. Krawczyk, E. Simakov, L. Faillace, M. Ferrario, B. Spataro, S. Karkare, J. Maxson, Y. Ma, J. Wurtele, A. Murokh, A. Zholents, A. Cianchi, D. Cocco, and S.B. van der Geer, "An ultra-compact x-ray free-electron laser", New J. Phys. 22, 093067 (2020). [PDF]


26. A. Rana, J. Zhang, M. Pham, A. Yuan, Y. H. Lo, H. Jiang, S. Osher and J. Miao, "Potential of attosecond coherent diffractive imaging", Phys. Rev. Lett. 125, 086101 (2020). [PDF]


27. J.Liu, J. Zenga, C. Zhua, J. Miao, Y. Huang and H. Heinz, "Interpretable molecular models for molybdenum disulfide and insight into selective peptide recognition", Chem. Sci.11, 8708 (2020). [PDF]


28. Y. Yao, Z. Liu, P. Xie, Z. Huang, T. Li, D. Morris, Z. Finfrock, J. Zhou, M. Jiao, J. Gao, Y. Mao, J. Miao, P. Zhang, R. Shahbazian-Yassar, C. Wang, G. Wang and L. Hu, "Computationally aided, entropy-driven synthesis of highly efficient and durable multi-elemental alloy catalysts", Sci. Adv. 6, eaaz0510 (2020). [PDF]


29. J. Zhou, Y. Yang, P. Ercius and J. Miao, "Atomic electron tomography in three and four dimensions", MRS Bulletin 45, 290 (2020). [PDF]


30. X. Tian, D. S. Kim, S. Yang, C. J. Ciccarino, Y. Gong, Yo. Yang, Ya. Yang, B. Duschatko, Y. Yuan, P. M. Ajayan, J. C. Idrobo, P. Narang and J. Miao, "Correlating the three-dimensional atomic defects and electronic properties of two-dimensional transition metal dichalcogenides", Nature Mater. 19, 867-873 (2020). [PDF]


31. C. C.Dharmawardhana, J. Zhou, M. Taylor, J. Miao, J. H.Perepezko, H. Heinz, "Reactive modeling of Mo3Si oxidation and resulting silica morphology", Acta Mater. 187, 93 (2020). [PDF]


32. M. Pham, A. Rana, J. Miao and S. Osher, "Semi-implicit relaxed Douglas-Rachford algorithm (sDR) for ptychography", Opt. Express. 22, 31246 (2019). [PDF]


33. Y. H. Lo, C. Liao, J. Zhou, A. Rana, C. S. Bevis, G. Gui, B. Enders, K. M. Cannon, Y. Yu, R. Celestre, K. Nowrouzi, D. Shapiro, H. Kapteyn, R. Falcone, C. Bennett, M. Murnane and J. Miao, "Multimodal x-ray and electron microscopy of the Allende meteorite", Sci. Adv. 5, eaax3009 (2019). [PDF]


34. J. Zhou, Y. Yang, Y. Yang, D. S. Kim, A. Yuan, X. Tian, C. Ophus, F. Sun, A. K. Schmid, M. Nathanson, H. Heinz, Q. An, H. Zeng, P. Ercius and J. Miao, "Observing crystal nucleation in four dimensions using atomic electron tomography", Nature 570, 500-503 (2019). [PDF]


35. Z. Zhao, M. M. F. Espinosa, J. Zhou, W. Xue, X. Duan, J. Miao, & Y. Huang, "Synthesis of surface controlled nickel/palladium hydride nanodendrites with high performance in benzyl alcohol oxidation", Nano Res. 12, 1467 (2019). [PDF]


36. Y. Ihm, D. H. Cho, D. Sung, D. Nam, C. Jung, T. Sato, S. Kim, J. Park, S. Kim, M. Gallagher-Jones, Y. Kim, R. Xu, S. Owada, J. H. Shim, K. Tono, M. Yabashi, T. Ishikawa, J. Miao, D. Y. Noh & C. Song, "Direct observation of picosecond melting and disintegration of metallic nanoparticles", Nat. Commun. 10, 2411 (2019). [PDF]


37. M. Pham, P. Yin, A. Rana, S. Osher and J. Miao, "Generalized proximal smoothing (GPS) for phase retrieval", Opt. Express 27, 2792-2808 (2019). [PDF]


38. M. Nathanson, K. Kanhaiya, A. Pryor, Jr., J. Miao and H. Heinz, "Atomic-Scale Structure and Stress Release Mechanism in Core−Shell Nanoparticles", ACS Nano 12, 12296−12304 (2018). [PDF]


39. J. Deng, Y. H. Lo, M. Gallagher-Jones, S. Chen, A. Pryor Jr, Q. Jin, Y. P. Hong, Y. S. G. Nashed, S. Vogt, J. Miao, and C. Jacobsen, "Correlative 3D x-ray fluorescence and ptychographic tomography of frozen-hydrated green algae", Sci. Adv. 4, eaau4548 (2018). [PDF]


40. J. Zhou, M. Taylor, G. A. Melinte, A. J. Shahani, C. C. Dharmawardhana, H. Heinz, P. W.Voorhees, J. H. Perepezko, K. Bustillo, P. Ercius and J. Miao, "Quantitative characterization of high temperature oxidation using electron tomography and energydispersive X-ray spectroscopy", Sci. Rep. 8, 10239 (2018). [PDF]


41. J. Liu, E. Tennessen, J. Miao, Y. Huang, J. M. Rondinelli and H. Heinz, "Understanding Chemical Bonding in Alloys and the Representation in Atomistic Simulations", J. Phys. Chem. C 122, 14996-15009 (2018). [PDF]


42. A. Pryor, Jr., A. Rana, R. Xu, J. A. Rodriguez, Y. Yang, M. Gallagher-Jones, H. Jiang, K. Kanhaiya, M. Nathanson, J. Park, S. Kim, S. Kim, D. Nam, Y. Yue, J. Fan, Z. Sun, B. Zhang, D. F. Gardner, C. S. B. Dias, Y. Joti, T. Hatsui, T. Kameshima, Y. Inubushi, K. Tono, J. Y. Lee, M. Yabashi, C. Song, T. Ishikawa, H. C. Kapteyn, M. M. Murnane, H. Heinz and J. Miao, "Single-shot 3D coherent difractive imaging of core-shell nanoparticles with elemental specifcity", Sci. Rep. 8, 8284 (2018). [PDF]


43. Y. H. Lo, L. Zhao, M. Gallagher-Jones, A. Rana, J. J. Lodico, W. Xiao, B.C. Regan and J. Miao, "In situ coherent diffractive imaging", Nat. Commun. 9, 1826 (2018). [PDF] [Peer Review File]


44. J. Miao, "Multi-model imaging of the interaction of nanomaterials with cells", IUCrJ 5, 122 (2018). [PDF]


45. A. Pryor Jr., C. Ophus and J. Miao, "A streaming multi-GPU implementation of?image simulation algorithms for?scanning transmission electron microscopy", Adv. Struct. Chem. Imag. 3, 15 (2017). [PDF]


46. A. Pryor Jr., Y. Yang, A. Rana, M. Gallagher-Jones, J. Zhou, Y. H. Lo, G. Melinte, W. Chiu, J. A. Rodriguez and J. Miao, "GENFIRE: A generalized Fourier iterative reconstruction algorithm for high-resolution 3D imaging", Sci. Rep. 7, 10409 (2017). [PDF]


47. M. Gallagher-Jones, C. S. Baraldi-Dias, A Pryor, Jr., K. Bouchmella, L. Zhao, Y. H. Lo, M. B. Cardoso, D. Shapiro, J. Rodriguez and J. Miao, "Correlative cellular ptychography with functionalized nanoparticles at the Fe L-edge", Sci. Rep. 7, 4757 (2017). [PDF]


48. C. C. Dharmawardhana, K. Kanhaiya, T. Z. Lin, M. R. Knecht, J. Zhou, J. Miao and H. Heinz, "Reliable Computational Design of Biological and Inorganic Materials to the Large Nanometer Scale Using the Interface Force Field", Mol. Simul. 43, 1394-1405 (2017). [PDF]


49. Y. Yang, C.-C. Chen, M. C. Scott, C. Ophus, R. Xu, A. Pryor Jr., L. Wu, F. Sun, W. Theis, J. Zhou, M. Eisenbach, P. R. C. Kent, R. F. Sabirianov, H. Zeng, P. Ercius, and J. Miao, "Deciphering chemical order/disorder and material properties at the single-atom level", Nature 542, 75-79 (2017). [PDF]


50. M. Gallagher-Jones, J. A. Rodriguez and J. Miao, "Frontier methods in coherent X-ray diffraction for high-resolution structure determination", Q. Rev. Biophys. 49, e20 (2016). [PDF]


51. Z. Zhao, M. Feng, J. Zhou, Z. Liu, M. Li, Z. Fan, O. Tsen, J. Miao, X. Duan and Y. Huang, "Composition tunable ternary Pt-Ni-Co octahedra for optimized oxygen reduction activity", Chem. Commun. 52, 11215 (2016). [PDF]


52. J. Miao, P. Ercius and S. J. L. Billinge, "Atomic electron tomography: 3D structures without crystals", Science 353, aaf2157 (2016). (Review) [PDF]


53. B.D.A. Levin, E. Padgett, C.-C. Chen, M.C. Scott, R. Xu, W. Theis, Y. Jiang, Y. Yang, C. Ophus, H. Zhang, D.-H. Ha, D. Wang, Y. Yu, H.D. Abru?a, R.D. Robinson, P. Ercius, L.F. Kourkoutis, J. Miao, D.A. Muller and R. Hovden, "Nanomaterial datasets to advance tomography in scanning transmission electron microscopy", Sci. Data 3, 160041 (2016). [PDF]


54. B. Leshem, R. Xu, Y. Dallal, J. Miao, B. Nadler, D. Oron, N. Dudovich and O. Raz, "Direct single-shot phase retrieval from the diffraction pattern of separated objects", Nature Commun. 7, 10820 (2016). [PDF]


55. M. Odstrcil, J. Bussmann, D. Rudolf, R. Bresenitz, J. Miao, W. S. Brocklesby and L. Juschkin, "Ptychographic imaging with a compact gas- discharge plasma extreme ultraviolet light source", Opt. Lett. 40, 5574-5577 (2015).[PDF]


56. R. Xu, C.-C. Chen, L. Wu, M. C. Scott, W. Theis, C. Ophus, M. Bartels, Y. Yang, H. Ramezani-Dakhel, M. R. Sawaya, H. Heinz, L. D. Marks, P. Ercius and J. Miao , "Three-Dimensional Coordinates of Individual Atoms in Materials Revealed by Electron Tomography", Nature Mater. 14, 1099-1103 (2015).[PDF]


57. J. A. Rodriguez, R. Xu, C.-C. Chen, Z. Huang, H. Jiang, A. L. Chen, K. S. Raines, A. Pryor, Jr., D, Nam, L. Wiegart, C. Song, A. Madsen, Y. Chushkin, F. Zontone, P. J. Bradley and J. Miao, "Three-dimensional Coherent X-ray Diffractive Imaging of Whole, Frozen-Hydrated Cells", IUCrJ 2, 575–583 (2015).[PDF]


58. Z. Huang, M. Bartels, R. Xu, M. Osterhoff, S. Kalbfleisch, M. Sprung, A. Suzuki, Y. Takahashi, T. N. Blanton, T. Salditt, and J. Miao, "Grain rotation and lattice deformation during photoinduced chemical reactions revealed by in situ X-ray nanodiffraction", Nature Mater. 14, 691-695 (2015).[PDF]


59. J. Miao, T. Ishikawa, I. K. Robinson and M. M. Murnane, "Beyond crystallography: Diffractive imaging using coherent x-ray light sources", Science 348, 530-535 (2015). (Review)[PDF]


60. Y. Shechtman, Y. C. Eldar, O. Cohen, H. N. Chapman, J. Miao and M. Segev, "Phase Retrieval with Application to Optical Imaging: A contemporary overview", IEEE Signal Processing Mag. 32, 87–109 (2015).[PDF]


61. S. J. L. Billinge and J. Miao, "Celebrating the past, looking to the futures", Acta Cryst. A 71, 1-2 (2015).[PDF]


62. O. Raz, B. Leshem, J. Miao, B. Nadler, D. Oron and N. Dudovich, "Direct phase retrieval in double blind Fourier holography", Opt. Express 22, 24935-24950 (2014).[PDF]


63. R. Xu, H. Jiang, C. Song, J. A. Rodriguez, Z. Huang, C.-C. Chen, D. Nam, J. Park, M. Gallagher-Jones, S. Kim, S. Kim, A. Suzuki, Y. Takayama, T. Oroguchi, Y. Takahashi, J. Fan, Y. Zou, T. Hatsui, Y. Inubushi, T. Kameshima, K. Yonekura, K. Tono, T. Togashi, T. Sato, M. Yamamoto, M. Nakasako, M. Yabashi, T. Ishikawa and J. Miao, "Single-shot three-dimensional structure determination of nanocrystals with femtosecond X-ray free-electron laser pulses", Nature Commun. 5, 4061 (2014).[PDF]


64. J. Miao and J. A. Rodriguez, "Phasing tiny crystals", IUCrJ. 1, 3-4 (2014).[PDF]


65. J. Miao, C. C. Chen, C. Zhu, M. C. Scott, E. R. White, C. Y. Chiu, B. C. Regan, Y Huang, and L. D. Marks, "Reply to 'Three-dimensional imaging of dislocations'", Nature 503, E2 (2013).[PDF]


66. S. J. L. Billinge and J. Miao, "A new vision for Acta Crystallographica Section A" (Editorial), Acta Cryst. A 69, 533-534 (2013).[PDF]


67. C. Zhu, C.-C. Chen, J. Du, M. R. Sawaya, M. C. Scott, P. Ercius, J. Ciston and J. Miao, "Towards three-dimensional structural determination of amorphous materials at atomic resolution", Phys. Rev. B (Rapid Commun) 88, 100201 (2013).[PDF]


68. R. L. Sandberg, Z. Huang, R. Xu, J. A. Rodriguez and J. Miao, "Studies of Materials at the Nanometer Scale using Coherent X-Ray Diffraction Imaging" JOM. 65, 1208-1220 (2013).[PDF]


69. H. Jiang, R. Xu, C.-C. Chen, W. Yang, J. Fan, X. Tao, C. Song, Y. Kohmura, T. Xiao, Y. Wang, Y. Fei, T. Ishikawa, W. L. Mao and J. Miao, "Three-Dimensional Coherent X-Ray Diffraction Imaging of Molten Iron in Mantle Olivine at Nanoscale Resolution", Phys. Rev. Lett. 110, 205501 (2013).[PDF]


70. C.-C. Chen, C. Zhu, E. R. White, C.-Y. Chiu, M. C. Scott, B. C. Regan, L. D. Marks, Y. Huang and J. Miao, "Three-dimensional imaging of dislocations in a nanoparticle at atomic resolution", Nature 496, 74-77 (2013). [PDF]


71. J. A. Rodriguez, R. Xu, C.-C. Chen, Y. Zou and J. Miao, "Oversampling smoothness: an effective algorithm for phase retrieval of noisy diffraction intensities", J. Appl. Cryst. 46, 312-318 (2013).[PDF]


72. A. Marinelli, M. Dunning, S. Weathersby, E. Hemsing, D. Xiang, G. Andonian, F. O'Shea, J. Miao, C. Hast, and J. B. Rosenzweig, "Single-shot coherent diffraction imaging of microbunched relativistic electron beams for free-electron laser applications", Phys. Rev. Lett. 110, 094802 (2013).[PDF]


73. B. P. Fahimian, Y. Zhao, Z. Huang, R. Fung, Y. Mao, C. Zhu, M. Khatonabadi, J. J. DeMarco, S. J. Osher, M. F. McNitt-Gray and J. Miao, "Radiation dose reduction in medical x-ray CT via Fourier-based iterative reconstruction", Med. Phys. 40, 031914(2013).[PDF]


74. Chien-Chun Chen, Huaidong Jiang, Lu Rong, Sara Salha, Rui Xu, Thomas G. Mason, and Jianwei Miao, Reply to "Comment on 'Three-dimensional imaging of a phase object from a single sample orientation using an optical laser,' " Phys. Rev. B 86, 226102 (2012).[PDF]


75. J. Kirz, C. Jacobsen and J. Miao, "David Sayre", Physics Today, June 22, 65 - 66 (2012).[PDF]


76. Y. Zhao, E. Brun, P. Coan, Z. Huang, A. Sztrokay, P. C. Diemoz, S. Liebhardt, A. Mittone, S. Gasilov, J. Miao and A. Bravin, "High resolution, low dose phase contrast x-ray tomography for 3D diagnosis of human breast cancers", Proc. Natl. Acad. Sci. USA 109, 18290-18294 (2012).[PDF]


77. I. Schlichting and J. Miao, "Emerging opportunities in structural biology with X-ray free-electron lasers", Curr. Opin. Struct. Biol. 22, 613-626 (2012).[PDF]


78. J. Kirz and J. Miao, "David Sayre (1924-2012): Crystallographer who pioneered methods of X-ray imaging and modern computing", Nature 484, 38 (2012).[PDF]


79. M. C. Scott, Chien-Chun Chen, Matthew Mecklenburg, Chun Zhu, Rui Xu, Peter Ercius, Ulrich Dahmen, B. C. Regan & Jianwei Miao, Electron tomography at 2.4-angstrom resolution, Nature 483, 444-447 (2012). [PDF]


80. J. Miao, R. L. Sandberg and C. Song Coherent Diffraction Imaging with X-rays (invited review), IEEE J. Sel. Top. Quant. Electron 18, 399-410 (2012).[PDF]


81. C.-C. Chen, H. Jiang, L. Rong, S. Salha, R. Xu, T. G. Mason and J. Miao, Three-dimensional imaging of a phase object from a single sample orientation using an optical laser", Phys. Rev. B 84, 224104 (2011).[PDF]


82. M. D. Seaberg, D. E. Adams, E. L. Townsend, D. A. Raymondson, W. F. Schlotter, Y. Liu, C. S. Menoni, L. Rong, C.-C. Chen, J. Miao, H. C. Kapteyn and M. M. Murnane. "Ultrahigh 22 nm resolution coherent diffractive imaging using a desktop 13 nm high harmonic source", Opt. Express 19, 22470-22479 (2011).[PDF]


83. C.-C. Chen, C.-H. Lu, D. Chien, J. Miao and T.K. Lee, "Three-dimensional Image Reconstruction of Radiation-Sensitive Samples with X-ray Diffraction Microscopy," Phys. Rev. B 84, 024112 (2011).[PDF]


84. R. Xu, S. Salha, K. S. Raines, H. Jiang, C.-C. Chen, Y. Takahashi, Y. Kohmura, Y. Nishino, C. Song, T. Ishikawa, J. Miao, Coherent Diffraction Microscopy at SPring-8: Instrumentation, Data Acquisition and Data Analysis, J. Synch. Rad. 18, 293-298 (2011).[PDF]


85. B. P. Fahimian, Y. Mao, P. Cloetens, and J. Miao, Low Dose X-ray Phase-Contrast and Absorption CT Using Equally-Sloped Tomograph, Phys. Med. Bio. 55, 5383-5400 (2010).[PDF]


86. H. Jiang, C. Song, C.-C. Chen, R. Xu, K. S. Raines, B. P. Fahimian, C.-H.Lu, T. K. Lee, A. Nakashima, J. Urano, T. Ishikawa, F. Tamanoi, and J. Miao, Quantitative 3D Imaging of Whole, Unstained Cells by Using X-ray Diffraction Microscopy, Proc. Natl. Acad. Sci. USA 107, 11234-11239 (2010).[PDF]


87. Y. Mao, B. P. Fahimian, S. J. Osher, and J. Miao, Development and Optimization of Regularized Tomographic Reconstruction Algorithms Utilizing Equally-Sloped Tomography, IEEE Trans. Image Processing 19, 1259-1268 (2010).[PDF]


88. K. S. Raines, S. Salha, R. L. Sandberg, H. Jiang, J. A. Rodriguez, B. P. Fahimian, H. C. Kapteyn, J. Du and J. Miao, Three-Dimensional Structure Determination From a Single View, Nature 463, 214-217 (2010).[PDF]


89. R. L. Sandberg, D. A. Raymondson, W. F. Schlotter, K. S. Raines, C. La-O-Vorakiat, A. Paul, M. M. Murnane, H. C. Kapteyn and J. Miao, Near diffraction limited coherent diffractive imaging with tabletop soft x-ray sources, J. Phys.: Conf. Series 186, 012058 (3 pp.) (2009).[PDF]


90. D. A. Raymondson, R. L. Sandberg, W. F. Schlotter, K. S. Raines, C. La-o-Vorakiat, E. Townsend, E., A. Sakdinawat, A. Paul, J. Miao, M. M. Murnane and H. C. Kapteyn, Tabletop coherent diffractive microscopy with extreme ultraviolet light from high harmonic generation", Proc. SPIE 7272, 72720F (8 pp.) (2009).[PDF]


91. L. Baghaei, A. Rad, B. Dai, P. Pianetta, R. F. W. Pease and J. Miao, Iterative Phase Recovery Using Wavelet Domain Constraints, J. Vac. Sci. Technol. B. 27, 3192-3195 (2009).[PDF]


92. J. A. Rodriguez, M. Lopez, M. Thayer, Y. Zhao, M. Oberholzer, D. Chang, N. K. Kisalu, M. L. Penichet, G. Helguera, R. Bruinsma, K. L. Hill and J. Miao, Propulsion of African Trypanosomes is Driven by Bihelical Waves with Alternating Chirality Separated by Kinks, Proc. Natl. Acad. Sci. USA 106, 19322-19327 (2009).[PDF]


93. M. M. Murnane and J. Miao, Ultrafast X-ray photography (News & Views), Nature 460, 1088-1090 (2009).[PDF]


94. R. L. Sandberg, D. A. Raymondson, C. La-o-vorakiat, A. Paul, K. S. Raines, J. Miao, M. M. Murnane, H. C. Kapteyn and W. F. Schlotter, Closing the Gap to the Diffraction Limit: Tabletop Soft X-Ray Fourier Transform Holography, Opt. Lett. 4, 1618-1620 (2009).[PDF]


95. C. -C. Chen, J. Miao and T. K. Lee, Tomographic Image Alignment in 3D Coherent Diffraction Microscopy, Phys. Rev. B. 79, 052102 (2009).[PDF]


96. E. Lee, B.P. Fahimian, C.V. Iancu, C. Suloway, G.E. Murphy, E.R. Wright, G.J. Jensen and J. Miao, Radiation Dose Reduction and Image Enhancement in Biological Imaging through Equally Sloped Tomography, J. Struct. Biol. 164, 221-227 (2008).[PDF]


97. C. Song, H. Jiang, A. Mancuso, B. Amirbekian, L. Peng, R. Sun, S. S Shah, Z. H. Zhou, T. Ishikawa and J. Miao, Quantitative Imaging of Single, Unstained Viruses with Coherent X-rays, Phys. Rev. Lett 101, 158101 (2008).[Featured in the Discovery Channel and PhysicsWorld.com][PDF]


98. C. Song, R. Bergstrom, D. Ramunno-Johnson, H. Jiang, D. Paterson, M. D. de Jonge, I. McNulty, J. Lee, K. Wang and J. Miao, Nanoscale Imaging of Buried Structures by Using Element Specific X-ray Diffraction Microscopy, Phys. Rev. Lett. 100, 025504 (2008).[Featured in Nature Nanotech. 3, 126 (2008)][PDF]


99. H. Jiang, D. Ramunno-Johnson, C. Song, B. Amirbekian, Y. Kohmura, Y. Nishino, Y. Takahashi, T. Ishikawa and J. Miao, Nanoscale Imaging of Mineral Crystals inside Biological Composite Materials Using X-ray Diffraction Microscopy, Phys. Rev. Lett 100, 038103 (2008).[PDF]


100. R. L. Sandberg, C. Song, P. W. Wachulak, D. A. Raymondson, A. Paul, B. Amirbekian, E. Lee, A. E. Sakdinawat, M. C. Marconi, C. S. Menoni, M. M. Murnane, J. J. Rocca, H. C. Kapteyn, J. Miao, High Numerical Aperture Tabletop Soft X-ray Diffraction Microscopy with 70 nm Resolution, Proc. Natl. Acad. Sci. USA 105, 24-27 (2008) [Highlighted in Nature Photonics 2, 64 (2008)][PDF]


101. J. Miao, T. Ishikawa, T. Earnest and Qun Shen, Extending the Methodology of X-ray Crystallography to Allow Structure Determination of Non-Crystalline Materials, Whole Cells and Single Macromolecular Complexes (Invited Review), Annu. Rev. Phys. Chem 59, 387-409 (2008).[PDF]


102. C.C. Chen, J. Miao, C.W. Wang and T.K. Lee, Application of the Optimization Technique to Non-crystalline X-ray Diffraction Microscopy - Guided Hybrid Input-Output Method (GHIO), Phys. Rev. B 59, 064113 (2007).[PDF]


103. R.L. Sandberg, A. Paul, D. Raymondson, S. Hdrich, D. Gaudiosi, J. Holtsnider, R. Tobey, O. Cohen, M.M. Murnane, H.C. Kapteyn, C. Song, J. Miao, Y. Liu and F. Salmassi, Lensless Diffractive Imaging Using Tabletop, Coherent, High Harmonic Soft X-ray Beams, Phys. Rev. Lett. 99, 098103 (2007).[Highlighted in a News & Views article in Nature 449, 553-554 (2007)][PDF]


104. C. Song, D. Ramunno-Johnson, Y. Nishino, Y. Kohmura, T. Ishikawa, C.C. Chen, T.K. Lee and J. Miao, Phase Retrieval from Exactly Oversampled Diffraction Intensity Through Deconvolution, Phys. Rev. B 75, 012102 (2007).[PDF]


105. J. Miao, C.C. Chen, C. Song, Y. Nishino, Y. Kohmura, T. Ishikawa, D. Ramunno-Johnson, T.K. Lee and S.H. Risbud, Three-Dimensional GaN-Ga2O3 Core Shell Structure Revealed by X-ray Diffraction Microscopy, Phys. Rev. Lett. 97, 215503 (2006).[PDF]
     [Highlighted in news articles by National Cancer Institute, United Press International, the Materials World Magazine, and Medical News Today.]


106. Y. Nishino, J. Miao, Y. Kohmura, Y. Takahashi, C. Song, B. Johnson, M. Yamamoto, K. Koike, T. Ebisuzaki and T. Ishikawa, Hard X-ray Diffraction Microscopy at SPring-8, in Proceedings of the 8th International Conference on X-ray Microscopy, eds. by S. Aoki, Y. Kagoshima and Y. Suzuki, pp. 386-388 (2006).[PDF]


107. Y. Kohmura, Y. Nishino, T. Ishikawa and J. Miao, "Effect of Distorted Illumination Waves on Coherent Diffraction Microscopy, in Proceedings of the 8th International Conference on X-ray Microscopy, eds. by S. Aoki, Y. Kagoshima and Y. Suzuki, pp. 414-416 (2006).


108. Y. Kohmura, Y. Nishino, T. Ishikawa and J. Miao, Effect of Fresnel Illumination on Oversampling Iteration Method, J. App. Phys 98, 123105 (2005).[PDF]


109. J. Miao, Y. Nishino, Y. Kohmura, B. Johnson, C. Song, S.H. Risbud, T. Ishikawa, Quantitative Image Reconstruction of GaN Quantum Dots from Oversampled Diffraction Intensities Alone, Phys. Rev. Lett 95, 085503 (2005). [Featured on the American Physical Society 2006 calendar.][PDF]


110. J. Miao, F. Frster and O. Levi, Equally Sloped Tomography with Oversampling Reconstruction, Phys. Rev. B. 72, 052103 (2005).[PDF]


111. J. Miao, C. Song, Y. Nishino, Y. Kohmura, B. Johnson and T. Ishikawa, 3D Microscopy Provides the First Deep View, IEEE Tech Digest Tranducers 05 , pp. 1304-1305 (2005).[PDF]


112. I. K. Robinson and J. Miao, Three Dimensional Coherent X-ray Diffraction Microscopy, MRS Bulletin 29, 177-181 (2004).[PDF]


113. J. Miao, H. N. Chapman, J. Kirz, D. Sayre and K. O. Hodgson, Taking X-ray Diffraction to the Limit: Macromolecular Structures from Femtosecond X-ray Pulses and Diffraction Microscopy of Cells with Synchrotron Radiation (Invited Review), Annu. Rev. Biophys. Biomol. Struct. 3, 157-176 (2004).[PDF]


114. Y. Nishino, J. Miao and T. Ishikawa, Image Reconstruction of Nanostructured Non-Periodic Objects Only from Oversampled Hard X-ray Diffraction Intensities, Phys. Rev. B.(Rapid Commun.) 68, 220101 (2003).[PDF]


115. G.S. Edwards, R.H. Austin, F.E. Carroll, M.L. Copeland, M.E. Couprie, W.E.Gabella, R.F. Haglund, B.A. Hooper, M.S. Hutson, E.D. Jansen, K.M. Joos, D.P. Kiehart, I. Lindau, J. Miao, H.S. Pratisto, J.H. Shen, Y. Tokutake, L. van der Meer and Aihua Xie, Free-electron-laser-based biophysical and biomedical instrumentation, Rev. Sci. Instru. 74, 3207-3245 (2003).[PDF]


116. J. Miao, J. Amonette, Y. Nishino, T. Ishikawa and K. O. Hodgson, Direct Determination of the Absolute Electron Density of Nanostructured and Disordered Materials at Sub-10 nm Resolution, Phys. Rev. B 68, 012201 (2003).[PDF]


117. J. Miao, T. Ishikawa, E. H. Anderson and K. O. Hodgson, Phase Retrieval of Diffraction Patterns from Non-Crystalline Samples, Phys. Rev. B. 67, 174104 (2003).[PDF]


118. J. Miao, K. O. Hodgson, T. Ishikawa, C. A. Larabell, M. A. LeGros and Y. Nishino, Imaging Whole Escherichia Coli Bacteria by Using Single Particle X-ray Diffraction, Proc. Natl. Acad. Sci. USA 100, 110-112 (2003).[PDF]


119. J. Miao, T. Ohsuna, O. Terasaki, K. O. Hodgson and M. A. O'Keefe, Atomic Resolution Three-Dimensional Electron Diffraction Microscopy, Phys. Rev. Lett. 89, 155502 (2002).[PDF]


120. J. Miao, T. Ishikawa, B. Johnson, E. H. Anderson, B. Lai and K. O. Hodgson, High Resolution 3D X-ray Diffraction Microscopy, Phys. Rev. Lett. 89, 088303 (2002). (Cover Story)[PDF]
     [Highlighted in news articles in Physical Review Focus, August 6, 2002; Nature Science Update, August 14, 2002; Nature Physics Portal, August 6, 2002; CERN Courier, October 2002]


121. J. Miao, K. O. Hodgson and D. Sayre, "A Approach to 3-D Structures of Biomolecules Utilizing Single Molecule Diffraction Images, Proc. Natl. Acad. Sci. USA 98, 6641-6645 (2001).[PDF]
     [Highlighted in news articles in Proc. Natl. Acad. Sci. USA 98, 6535-6536 (2001); Nature Biotechnology 19, 739 (2001) ; BioCentury, the Bernstein Report on Biobusiness, June 11, 2001.]


122. J. C. H. Spence, M. Howells, L. D. Marks and J. Miao, Lensless imaging: a workshop on new approaches to the phase problem for non-periodic objects, Ultramicroscopy 90, 1-6 (2001).[PDF]


123. B. Winn, H. Ade, C. Buckley, M. Feser, M. Howells, S. Hulbert, C. Jacobsen, K. Kaznacheyev, J. Kirz, A. Osanna, J. Maser, I. McNulty, J. Miao, T. Oversluizen, S. Spector, B. Sullivan, Y. Wang, S. Wirick and H. Zhang, Illumination for coherent soft X-ray applications: The new X1A beamline at the NSLS, J. Synch. Rad. 7, 395-404 (2000).[PDF]


124. J. Miao and D. Sayre, On possible extensions of X-ray crystallography through diffraction pattern oversampling, Acta Cryst. A 56, 596-605 (2000).[PDF]


125. J. Miao, J. Kirz and D. Sayre, The oversampling phasing method, Acta Cryst. D 56, 1312-1315 (2000).[PDF]


126. D. Sayre, J. Miao, J. Kirz and P. Charalambous, An extension of the methodology of X-ray crystallography allowing imaging of micron-size non-crystalline specimens, in Proceedings of 2000 Erice conference on Methods in Macromolecular Crystallography (D. Turk, ed.). ]


127. J. Miao, P. Charalambous, J. Kirz and D. Sayre, An Extension of the Methodology of X-Ray Crystallography to Allow X-Ray Microscopy without X-Ray Optics, in X-ray Microscopy, eds. by W. Meyer-Ilse, T. Warwick and D. Attwood, pp. 581-586 (2000).[PDF]


128. J. Miao, P. Charalambous, J. Kirz and D. Sayre, Extending the methodology of X-ray Crystallography to Non-Crystalline Specimens, in Synchrotron Radiation Instrumentation, eds. by P. Pianetta, J. Arthur, and S. Brennan, pp. 3-6 (2000).[PDF]


129. J. Miao, P. Charalambous, J. Kirz and D. Sayre, Extending the methodology of X-ray crystallography to allow imaging of micrometre-sized non-crystalline specimens, Nature 400, 342-344 (1999).[Highlighted in news articles in Science 285, 509-511 (1999); Physics Today, Physics Update, October 1999; Physics News Update, Number 443 (Story #3), August16, 1999; The Scientist vol 13, 17, August 30, 1999.][PDF]


130. H. N. Chapman, S. Vogt, C. Jacobsen, J. Kirz, J. Miao, Y. Wang, B. Winn and T. Oversluizen, A Shutter-Photodiode combination for UV and soft X-ray beamline, J. Synch. Rad. 6, 50 (1999).[PDF]


131. J. Miao, D. Sayre and H. N. Chapman, Phase Retrieval from the Magnitude of the Fourier transform of Non-periodic Objects, J. Opt. Soc. Am. A 15, 1662-1669 (1998).[PDF]


132. D. Sayre, H. N. Chapman and J. Miao, On the Extendibility of X-ray Crystallography to Non-crystals, Acta Cryst. A 54, 232-239 (1998).[PDF]


133. J. Miao, H. N. Chapman and D. Sayre, Image Reconstruction from the Oversampled Diffraction Pattern, Microscopy and Microanalysis 3, supplement 2, 1155-1156 (1997).


134. B. Winn, H. Ade, C. Buckley, M. Howells, S. Hulbert, C. Jacobsen, J. Kirz, I. McNulty, J. Miao, T. Oversluizen, I. Pogorelsky and S. Wirick, X1A: Second Generation Undulator Beamline Serving Soft X-ray Spectromicroscopy Experiment at the NSLS, Rev. Sci. Instru. 67, 3359 (1996).


135. B. Winn, X. Hao, C. Jacobsen, J. Kirz, J. Miao, S. Wirick, H. Ade, C. Buckley, M. Howell, S. Hulbert, I. McNulty and T. Oversluizen, Consideration for Soft X-ray Spectromicroscopy Beamline, SPIE Proc. 2856, 100-109 (1996).


136. N. V. Andronova, V. G. Kohn, A. I. Chechin, E. Tang, J. Miao and M. Cui, Computer Simulation and Experimental Investigation of X-ray Multilayer Mirrors, Nucl. Instru. Methods A 359, 135-137 (1995).


137. M. Cui, J. Miao, J. Wang, Y. Huang, E. Tang, J. Shao, S. Xue, Z. Xu and J. Sun, A Synchrotron Radiation Soft X-ray Reflectometer and Its Physical Results, Nucl. Instru. Methods A 359, 151-154 (1995).


138. L. Yuan, Z. Yin, J. Shao, K. Yi, M. Cui, J. Miao, L. Liu, G. Chen and X. Shen, Diffractive Efficiency Study of Soft X-ray Multilayer Grating with Sub-micron Grating Period, Acta Physica Sinica (in Chinese) 44, 184-188 (1995).


139. J. Miao, M. Cui, J. Wang and E. Tang, Study of Multilayer Mirror Reflectivity in the Soft X-ray Region, Acta Physica Sinica (oversea edition) 4, 130-138 (1995).


140. M. Cui, J. Wang, J. Miao, Y. Huang, E. Tang, D. Xian, J. Shao, S. Xue, Z. Xu and J. Su, A Soft X-ray Reflectometer at the Beijing Synchrotron Radiation Facility and Its Results, High Energy Phys. and Nucl. Phys. (in Chinese) 19, 82-86 (1995).


141. L. Yuan, Z. Fan, G. Yin, K. Yi, J. Shao, M. Cui, L. Liu, J. Miao, G. Chen and X. Shao, Development and Optical Performance of Soft X-ray Multilayer Phase Laminar Grating, Acta Optica Sinica (in Chinese) 14(6), 642-645 (1994).


142. J. Miao, M. Cui and E. Tang, The Factors of Interfering with Reflectivity of Multilayer Mirrors in the Soft X-ray Region, in X-ray Microscopy IV ( eds. by V. V. Aristov & A. I. Erko) 573-577 (Bogorodskii, Pechatnik, 1994).


143. J. Miao, M. Cui, E. Tang and L. Xiu, Thickness Measurement of Non-Transparent Dielectric Thin Films by Using an Ellipsometer, Opt. Mech. Eng. (in Chinese) 41, 135-140 (1992).